Koning, M., Dumas, S. J., Avramut, M. C., Koning, R. I., Meta, E., Lievers, E., Wiersma, L. E., Borri, M., Liang, X., Xie, L., Liu, P., Chen, F.
, Lin, L., Luo, Y., Mulder, J., Spijker, H. S., Jaffredo, T., van den Berg, B. M.
, Carmeliet, P. ... Rabelink, T. J. (2022).
Vasculogenesis in kidney organoids upon transplantation.
npj Regenerative Medicine,
7(1), Article 40.
https://doi.org/10.1038/s41536-022-00237-4
Arslanova, A., Shafaattalab, S., Ye, K., Asghari, P., Lin, L., Kim, B. R., Roston, T. M., Hove-Madsen, L., Van Petegem, F., Sanatani, S., Moore, E., Lynn, F., Søndergaard, M.
, Luo, Y., Chen, S. R. W. & Tibbits, G. F. (2021).
Using hiPSC-CMs to Examine Mechanisms of Catecholaminergic Polymorphic Ventricular Tachycardia.
Current Protocols,
1(12), Article e320.
https://doi.org/10.1002/cpz1.320
Song, Q., Datta, S., Liang, X., Xu, X., Pavicic, P., Zhang, X., Zhao, Y., Liu, S., Zhao, J., Xu, Y., Xu, J., Wu, L., Wu, Z., Zhang, M., Zhao, Z., Lin, C., Wang, Y., Han, P., Jiang, P. ... Yang, J. (2023).
Type I interferon signaling facilitates resolution of acute liver injury by priming macrophage polarization.
Cellular & molecular immunology,
20(2), 143-157.
https://doi.org/10.1038/s41423-022-00966-y
Teuwen, L. A., De Rooij, L. P. M. H., Cuypers, A., Rohlenova, K., Dumas, S. J., García-Caballero, M., Meta, E., Amersfoort, J., Taverna, F., Becker, L. M., Veiga, N., Cantelmo, A. R., Geldhof, V., Conchinha, N. V.
, Kalucka, J., Treps, L., Conradi, L. C., Khan, S., Karakach, T. K.
... Carmeliet, P. (2021).
Tumor vessel co-option probed by single-cell analysis.
Cell Reports,
35(11), Article 109253.
https://doi.org/10.1016/j.celrep.2021.109253
Kostanjšek, R., Diderichsen, B., Recknagel, H., Gunde-Cimerman, N., Gostinčar, C., Fan, G., Kordiš, D., Trontelj, P., Jiang, H.
, Bolund, L. & Luo, Y. (2022).
Toward the massive genome of Proteus anguinus-illuminating longevity, regeneration, convergent evolution, and metabolic disorders.
Annals of the New York Academy of Sciences,
1507(1), 5-11.
https://doi.org/10.1111/nyas.14686
Li, C., Zhang, Y., Leng, L., Pan, X., Zhao, D., Li, X., Huang, J.
, Bolund, L., Lin, G.
, Luo, Y. & Xu, F. (2022).
The single-cell expression profile of transposable elements and transcription factors in human early biparental and uniparental embryonic development.
Frontiers in Cell and Developmental Biology,
10, Article 1020490.
https://doi.org/10.3389/fcell.2022.1020490
Jensen, I. S., Yuan, J., He, J., Lin, L., Sander, B. & Golas, M. M. (2019).
The FlpTRAP system for purification of specific, endogenous chromatin regions.
Analytical Biochemistry,
587, Article 113418.
https://doi.org/10.1016/j.ab.2019.113418
Sølvsten, C., Daugaard, T. F., Luo, Y., de Paoli, F. V., Christensen, J. H. & Nielsen, A. L. (2017).
The Effects of Voluntary Physical Exercise-Activated Neurotrophic Signaling in Rat Hippocampus on mRNA Levels of Downstream Signaling Molecules.
Journal of Molecular Neuroscience,
62(2), 142-153.
https://doi.org/10.1007/s12031-017-0918-9
Zhang, C., Li, C., Yang, L., Leng, L., Jovic, D., Wang, J., Fang, F., Li, G., Zhao, D., Li, X.
, Lin, L., Luo, Y., Bolund, L., Huang, J., Lin, G. & Xu, F. (2021).
The Dynamic Changes of Transcription Factors During the Development Processes of Human Biparental and Uniparental Embryos.
Frontiers in Cell and Developmental Biology,
9, Article 709498.
https://doi.org/10.3389/fcell.2021.709498
Berthelsen, M. F., Riedel, M., Cai, H., Skaarup, S. H., Alstrup, A. K. O., Dagnæs-Hansen, F., Luo, Y., Jensen, U. B., Hager, H.
, Liu, Y., Callesen, H., Vendelbo, M. H., Jakobsen, J. E. & Thomsen, M. K. (2021).
The CRISPR/Cas9 Minipig—A Transgenic Minipig to Produce Specific Mutations in Designated Tissues.
Cancers,
13(12), Article 3024.
https://doi.org/10.3390/cancers13123024
Berthelsen, M. F., Møller, S., Callesen, H., Dagnæs-Hansen, F., Luo, Y., Jakobsen, J. E. & Thomsen, M. K. (2016).
The CRISPR-Cas9 Minipig.
Cai, Y., Laustsen, A., Zhou, Y., Sun, C., Anderson, M. V., Li, S., Uldbjerg, N., Luo, Y., Jakobsen, M. R. & Mikkelsen, J. G. (2016).
Targeted, homology-driven gene insertion in stem cells by ZFN-loaded 'all-in-one' lentiviral vectors.
eLife,
5(JUN2016), Article e12213.
https://doi.org/10.7554/eLife.12213
Luo, Y., Kofod-Olsen, E., Christensen, R., Sørensen, C. B. & Bolund, L. (2012).
Targeted Genome Editing by Recombinant Adeno-Associated Virus (rAAV) Vectors for Generating Genetically Modified Pigs.
Journal of Genetics and Genomics,
39(6), 269-74.
https://doi.org/10.1016/j.jgg.2012.05.004
Secher, J. O., Ceylan, A., Mazzoni, G., Mashayekhi, K., Li, T., Muenthaisong, S.
, Nielsen, T. T., Li, D.
, Li, S., Petkov, S., Cirera, S.
, Luo, Y., Thombs, L., Kadarmideen, H. N., Dinnyes, A.
, Bolund, L., Roelen, B. A. J., Schmidt, M.
, Callesen, H. ... Freude, K. K. (2017).
Systematic in vitro and in vivo characterization of Leukemia-inhibiting factor- and Fibroblast growth factor-derived porcine induced pluripotent stem cells.
Molecular Reproduction and Development,
84(3), 229-245.
https://doi.org/10.1002/mrd.22771
Zheng, T.
, Huang, J., Xiang, X., Li, S., Yu, J., Qu, K., Xu, Z., Han, P., Dong, Z., Liu, Y., Xu, F., Yang, H., Jäättelä, M.
, Luo, Y. & Liu, B. (2021).
Systematical analysis reveals a strong cancer relevance of CREB1-regulated genes.
Cancer Cell International,
21(1), Article 530.
https://doi.org/10.1186/s12935-021-02224-z
Pribenszky, C., Vajta, G., Molnár, M., Du, Y.
, Lin, L., Bolund, L. & Yovich, J. (2010).
Stress for Stress Tolerance? A Fundamentally New Approach in Mammalian Embryology.
Biology of Reproduction,
83(5), 690-697.
https://doi.org/10.1095/biolreprod.110.083386
Liu, B.
, Palmfeldt, J., Lin, L., Colaço, A., Clemmensen, K. K. B., Huang, J., Xu, F., Liu, X., Maeda, K.
, Luo, Y. & Jäättelä, M. (2018).
STAT3 associates with vacuolar H+-ATPase and regulates cytosolic and lysosomal pH.
Cell Research,
28(10), 996–1012.
https://doi.org/10.1038/s41422-018-0080-0
Yang, S., Lan, T., Wei, R.
, Lin, L., Du, H., Huang, Y., Zhang, G., Huang, S., Shi, M., Wang, C., Li, R., Han, L., Tang, D., Li, H., Zhang, H., Cui, J., Lu, H., Huang, J.
, Luo, Y. ... Fang, S.-G. (2023).
Single-nucleus transcriptome inventory of giant panda reveals cellular basis for fitness optimization under low metabolism.
BMC Biology,
21(1), 222. Article 222.
https://doi.org/10.1186/s12915-023-01691-2
Kalucka, J., de Rooij, L. P. M. H., Goveia, J., Rohlenova, K., Dumas, S. J., Meta, E., Conchinha, N. V., Taverna, F., Teuwen, L.-A., Veys, K., García-Caballero, M., Khan, S., Geldhof, V., Sokol, L., Chen, R., Treps, L., Borri, M., de Zeeuw, P., Dubois, C.
... Carmeliet, P. (2020).
Single-Cell Transcriptome Atlas of Murine Endothelial Cells.
Cell,
180(4), 764-779.e20.
https://doi.org/10.1016/j.cell.2020.01.015
Leng, L., Sun, J.
, Huang, J., Gong, F., Yang, L., Zhang, S., Yuan, X.
, Fang, F., Xu, X.
, Luo, Y., Bolund, L., Peters, B. A., Lu, G., Jiang, T., Xu, F. & Lin, G. (2019).
Single-Cell Transcriptome Analysis of Uniparental Embryos Reveals Parent-of-Origin Effects on Human Preimplantation Development.
Cell Stem Cell,
25(5), 697-712.e6.
https://doi.org/10.1016/j.stem.2019.09.004
Chai, C., Liang, L.
, Mikkelsen, N. S., Wang, W., Zhao, W., Sun, C.
, Bak, R. O., Li, H.
, Lin, L., Wang, F. & Luo, Y. (2024).
Single-cell transcriptome analysis of epithelial, immune, and stromal signatures and interactions in human ovarian cancer.
Communications Biology,
7(1), 131. Article 131.
https://doi.org/10.1038/s42003-024-05826-1
Jovic, D., Liang, X., Zeng, H.
, Lin, L., Xu, F.
& Luo, Y. (2022).
Single-cell RNA sequencing technologies and applications: A brief overview.
Clinical and Translational Medicine,
12(3), Article e694.
https://doi.org/10.1002/ctm2.694
Dumas, S. J., Meta, E., Borri, M., Goveia, J., Rohlenova, K., Conchinha, N. V., Falkenberg, K., Teuwen, L.-A., de Rooij, L.
, Kalucka, J., Chen, R., Khan, S., Taverna, F., Lu, W., Parys, M., De Legher, C., Vinckier, S., Karakach, T. K., Schoonjans, L.
... Carmeliet, P. (2020).
Single-Cell RNA Sequencing Reveals Renal Endothelium Heterogeneity and Metabolic Adaptation to Water Deprivation.
Journal of the American Society of Nephrology : JASN,
31(1), 118-138.
https://doi.org/10.1681/ASN.2019080832
Rohlenova, K., Goveia, J., García-Caballero, M., Subramanian, A.
, Kalucka, J., Treps, L., Falkenberg, K. D., de Rooij, L. P. M. H., Zheng, Y.
, Lin, L., Sokol, L., Teuwen, L.-A., Geldhof, V., Taverna, F., Pircher, A., Conradi, L.-C., Khan, S., Stegen, S., Panovska, D.
... Carmeliet, P. (2020).
Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis.
Cell Metabolism,
31(4), 862-877.e14.
https://doi.org/10.1016/j.cmet.2020.03.009
Geldhof, V., de Rooij, L. P. M. H., Sokol, L., Amersfoort, J., De Schepper, M., Rohlenova, K., Hoste, G., Vanderstichele, A., Delsupehe, A. M., Isnaldi, E., Dai, N., Taverna, F., Khan, S., Truong, A. C. K., Teuwen, L. A., Richard, F., Treps, L., Smeets, A., Nevelsteen, I.
... Carmeliet, P. (2022).
Single cell atlas identifies lipid-processing and immunomodulatory endothelial cells in healthy and malignant breast.
Nature Communications,
13, Article 5511.
https://doi.org/10.1038/s41467-022-33052-y
Cham, L. B., Gunst, J. D., Schleimann, M. H., Frattari, G. S., Rosas-Umbert, M., Vibholm, L. K., van der Sluis, R. M., Jakobsen, M. R., Olesen, R., Lin, L., Tolstrup, M. & Søgaard, O. S. (2023).
Single cell analysis reveals a subset of cytotoxic-like plasmacytoid dendritic cells in people with HIV-1.
iScience,
26(9), Article 107628.
https://doi.org/10.1016/j.isci.2023.107628
Du, Y.
, Yang, Z., Lin, L., Lv, B.
, Kragh, P. M., Zhang, X., Vajta, G., Yang, H. & Bolund, L. (2010).
Simplified activation method to improve the in vitro development of handmade cloned (HMC) porcine embryos.
Reproduction, Fertility and Development, (1), 114.
http://www.publish.csiro.au/nid/45/issue/4842.htm
Almeida Ferreira, S. R., Li, C.
, Klæstrup, I. H., Vitic, Z., Rasmussen, R. K., Kirkegaard, A., Toft, G. U., Betzer, C., Svendsen, P., Jensen, P. H., Luo, Y., Etzerodt, A., Moestrup, S. K. & Romero-Ramos, M. (2023).
Sex-dimorphic neuroprotective effect of CD163 in an α-synuclein mouse model of Parkinson's disease.
npj Parkinson's Disease ,
9(1), 164. Article 164.
https://doi.org/10.1038/s41531-023-00606-w
Olagnier, D., Farahani, E., Thyrsted, J., Blay-Cadanet, J., Herengt, A., Idorn, M., Hait, A., Hernaez, B.
, Knudsen, A., Iversen, M. B., Schilling, M.
, Jørgensen, S. E., Thomsen, M., Reinert, L. S., Lappe, M., Hoang, H.-D., Gilchrist, V. H.
, Hansen, A. L., Ottosen, R. ... Holm, C. K. (2020).
SARS-CoV2-mediated suppression of NRF2-signaling reveals potent antiviral and anti-inflammatory activity of 4-octyl-itaconate and dimethyl fumarate.
Nature Communications,
11(1), Article 4938.
https://doi.org/10.1038/s41467-020-18764-3
Xiong, K., Zhou, Y., Blichfeld, K. A., Hyttel, P., Bolund, L., Freude, K. K.
& Luo, Y. (2017).
RNA-Guided Activation of Pluripotency Genes in Human Fibroblasts.
Cellular reprogramming,
19(3), 189-198.
https://doi.org/10.1089/cell.2017.0006
Rovsing, A. B., Thomsen, E. A., Nielsen, I., Skov, T. W., Luo, Y., Dybkær, K. & Mikkelsen, J. G. (2023).
Resistance to vincristine in DLBCL by disruption of p53-induced cell cycle arrest and apoptosis mediated by KIF18B and USP28.
British Journal of Haematology,
202(4), 825-839.
https://doi.org/10.1111/bjh.18872
Zhang, J., Li, H., Teng, H., Zhang, T.
, Luo, Y., Zhao, M., Li, Y.-Q. & Sun, Z. S. (2012).
Regulation of Peripheral Clock to Oscillation of Substance P Contributes to Circadian Inflammatory Pain.
Anesthesiology News,
117(1).
https://doi.org/10.1097/ALN.0b013e31825b4fc1
Zeng, Y., Wang, A.
, Lv, W., Wang, Q., Jiang, S., Pan, X.
, Wang, F., Yang, H.
, Bolund, L., Lin, C., Han, P.
& Luo, Y. (2023).
Recent development of urinary biomarkers for bladder cancer diagnosis and monitoring.
Clinical and Translational Discovery,
3(2), Article e183.
https://doi.org/10.1002/ctd2.183
Cavazza, A., Hendel, A.
, Bak, R. O., Rio, P., Güell, M., Lainšček, D., Arechavala-Gomeza, V., Peng, L., Hapil, F. Z., Harvey, J., Ortega, F. G., Gonzalez-Martinez, C., Lederer, C. W.
, Mikkelsen, K., Gasiunas, G., Kalter, N., Gonçalves, M. A. F. V., Petersen, J., Garanto, A. ... COST Action CA21113 (2023).
Progress and harmonization of gene editing to treat human diseases: Proceeding of COST Action CA21113 GenE-HumDi.
Molecular Therapy Nucleic Acids,
34, Article 102066.
https://doi.org/10.1016/j.omtn.2023.102066
Li, J., Liu, Y., Lin, L., Kragh, P. M., Jacobsen, J. E., Jørgensen, A. L.
, Purup, S., Bolund, L., Callesen, H. & Vajta, G. (2008).
Production of porcine chimeric embryos with aggregation of embryos or blastomeres. In
24th Annual Meeting AETE Proceedings (pp. 192)
YeYang, S. U.
, Lin, L., Geng, TIAN., Chen, CHEN., Tao, LIU., XingYa, XU., XinPeng, QI. & XiuQing, ZHANG. (2009).
Prepare re-sequencing DNA library of 2 cancer candidate genes using ligation-by-amplification protocol by two PCR reactions.
Science in China. Series C: Life Sciences,
52(5), 483-491.
https://doi.org/10.1007/s11427-009-0066-8
Schmidt, M.
, Kragh, P. M., Li, J., Du, Y., Lin, L., Liu, Y., Bøgh, I. B., Winther, K. D.
, Vajta, G. & Callesen, H. (2010).
Pregnancies and piglets from large white sow recipients after two transfer methods of cloned and transgenic embryos of different pig breeds.
Theriogenology,
74(7), 1233-1240.
https://doi.org/10.1016/j.theriogenology.2010.05.026
Gostinčar, C., Sun, X., Zajc, J., Fang, C., Hou, Y.
, Luo, Y., Gunde-Cimerman, N. & Song, Z. (2019).
Population Genomics of an Obligately Halophilic Basidiomycete Wallemia ichthyophaga.
Frontiers in Microbiology,
10.
https://doi.org/10.3389/fmicb.2019.02019
Xu, Z., He, J., Han, P., Dai, P.
, Lv, W., Liu, N., Liu, L., Liu, L., Pan, X., Xiang, X., Li, H., Ge, F., Gao, S., Liao, Z.
, Luo, Y. & Li, Y. (2023).
Plasma extrachromosomal circular DNA is a pathophysiological hallmark of short-term intensive insulin therapy for type 2 diabetes.
Clinical and Translational Medicine,
13(10), Article e1437.
https://doi.org/10.1002/ctm2.1437
Dantzer, V., Schmidt, M.
, Callesen, H., Winter, K. D.
, Kragh, P. M., Li, J., Du, Y.
, Lin, L., Liu, Y., Vajta, G. & Agerholm, J. S. (2011).
Placental morphology near term after transfer of cloned and transgenic embyoes: miscarriage showed endometrial oedema and blood extravasation.
Placenta,
2011(32), A23.