Jovic, D., Yu, Y., Wang, D., Wang, K., Li, H., Xu, F., Liu, C., Liu, J.
& Luo, Y. (2022).
A Brief Overview of Global Trends in MSC-Based Cell Therapy.
Stem Cell Reviews and Reports,
18(5), 1525-1545.
https://doi.org/10.1007/s12015-022-10369-1
Skorda, A., Lauridsen, A. R., Wu, C.
, Huang, J., Mrackova, M., Winther, N. I., Jank, V., Sztupinszki, Z., Strauss, R., Bilgin, M., Maeda, K., Liu, B.
, Luo, Y., Jäättelä, M. & Kallunki, T. (2023).
Activation of invasion by oncogenic reprogramming of cholesterol metabolism via increased NPC1 expression and macropinocytosis.
Oncogene,
42(33), 2495-2506.
https://doi.org/10.1038/s41388-023-02771-x
Andersen, O. M., Bøgh, N., Landau, A. M., Pløen, G. G., Jensen, A. M. G., Monti, G., Ulhøi, B. P., Nyengaard, J. R., Jacobsen, K. R.
, Jørgensen, M. M., Holm, I. E.
, Kristensen, M. L., Alstrup, A. K. O., Hansen, E. S. S., Teunissen, C. E., Breidenbach, L., Droescher, M.
, Liu, Y., Pedersen, H. S. ... Sørensen, C. B. (2022).
A genetically modified minipig model for Alzheimer's disease with SORL1 haploinsufficiency.
Cell Reports Medicine,
3(9), Article 100740.
https://doi.org/10.1016/j.xcrm.2022.100740
Vad-Nielsen, J., Lin, L., Jensen, K. T., Nielsen, A. L. & Luo, Y. (2016).
A Golden Gate-based Protocol for Assembly of Multiplexed gRNA Expression Arrays for CRISPR/Cas9.
Bio-protocol,
6(23), Article e2059.
https://doi.org/10.21769/BioProtoc.2059
Faienza, F., Polverino, F., Rajendraprasad, G., Milletti, G., Hu, Z., Colella, B., Gargano, D., Strappazzon, F., Rizza, S., Vistesen, M. V.
, Luo, Y., Antonioli, M., Cianfanelli, V., Ferraina, C., Fimia, G. M., Filomeni, G., De Zio, D., Dengjel, J., Barisic, M. ... Cecconi, F. (2023).
AMBRA1 phosphorylation by CDK1 and PLK1 regulates mitotic spindle orientation.
Cellular and molecular life sciences : CMLS,
80(9), Article 251.
https://doi.org/10.1007/s00018-023-04878-6
Liu, Z., Luo, Y., Jeppesen, P. B., Gregersen, S. & Hermansen, K. (2011).
Amino acid-induced gene expression profiling in clonal β-cell line INS-1E cells.
Diabetes - Metabolism: Research and Reviews (Print Edition),
27(2), 120-76.
https://doi.org/10.1002/dmrr.1153
Sjöstedt, E., Zhong, W., Fagerberg, L., Karlsson, M., Mitsios, N., Adori, C., Oksvold, P., Edfors, F., Limiszewska, A., Hikmet, F.
, Huang, J., Du, Y.
, Lin, L., Dong, Z., Yang, L., Liu, X., Jiang, H., Xu, X., Wang, J. ... Mulder, J. (2020).
An atlas of the protein-coding genes in the human, pig, and mouse brain.
Science,
367(6482), Article 5947.
https://doi.org/10.1126/science.aay5947
Liu, X., Xu, Y., Wang, R., Liu, S., Wang, J.
, Luo, Y., Leung, K.-S. & Cheng, L. (2021).
A network-based algorithm for the identification of moonlighting noncoding RNAs and its application in sepsis.
Briefings in bioinformatics,
22(1), 581-588.
https://doi.org/10.1093/bib/bbz154
Goveia, J., Rohlenova, K., Taverna, F., Treps, L., Conradi, L.-C., Pircher, A., Geldhof, V., de Rooij, L. P. M. H.
, Kalucka, J., Sokol, L., García-Caballero, M., Zheng, Y., Qian, J., Teuwen, L.-A., Khan, S., Boeckx, B., Wauters, E., Decaluwé, H., De Leyn, P.
... Carmeliet, P. (2020).
An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial Cell Heterogeneity and Angiogenic Candidates.
Cancer Cell,
37(1), 21-36.e13.
https://doi.org/10.1016/j.ccell.2019.12.001
Goveia, J., Rohlenova, K., Taverna, F., Treps, L., Conradi, L.-C., Pircher, A., Geldhof, V., de Rooij, L. P. M. H.
, Kalucka, J., Sokol, L., Garcia-Caballero, M., Zheng, Y., Qian, J., Teuwen, L.-A., Khan, S., Boeckx, B., Wauters, E., Decaluwe, H., De Leyn, P.
... Carmeliet, P. (2020).
An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial Cell Heterogeneity and Angiogenic Candidates (vol 37, pg 21.e1, 2020).
Cancer Cell,
37(3), 421-421.
https://doi.org/10.1016/j.ccell.2020.03.002
Fahlquist-Hagert, C., Wittenborn, T. R., Terczyńska-Dyla, E., Kastberg, K. S., Yang, E., Rallistan, A. N., Markett, Q. R.
, Winther, G., Fonager, S., Voss, L. F., Pedersen, M. K.
, van Campen, N., Ferapontov, A., Jensen, L., Huang, J., Nieland, J. D., van der Poel, C. E.
, Palmfeldt, J., Carroll, M. C.
... Degn, S. E. (2023).
Antigen presentation by B cells enables epitope spreading across an MHC barrier.
Nature Communications,
14(1), Article 6941.
https://doi.org/10.1038/s41467-023-42541-7
Gao, P., Li, S.
, Dong, Z., Luo, Y., Zhang, X., Han, L., Peng, S., Shen, J., Xu, F. & Deng, Z. (2024).
A plasma-derived exosomal microRNA signature by small RNA sequencing for early detection of postmenopausal osteoporosis.
Clinical and Translational Medicine,
14(4), e1637.
https://doi.org/10.1002/ctm2.1637
Huang, J., Lin, L., Dong, Z., Yang, L., Zheng, T., Gu, W., Zhang, Y., Yin, T., Sjöstedt, E., Mulder, J., Uhlén, M., Kristiansen, K.
, Bolund, L. & Luo, Y. (2021).
A porcine brain-wide RNA editing landscape.
Communications Biology,
4(1), 717. Article 717.
https://doi.org/10.1038/s42003-021-02238-3
Lin, L., Yu, Y.
, Zhang, X., Yang, H.
, Bolund, L., Callesen, H. & Vajta, G. (2011).
Aseptic minimum volume vitrification technique for porcine parthenogenetically activated blastocyst.
CryoLetters,
32(1), 62-68.
Zou, L., Luo, Y., Chen, M., Wang, G., Ding, M.
, Petersen, C. C., Kang, R., Dagnaes-Hansen, F., Zeng, Y., Lv, N., Ma, Q.
, Le, D. Q. S., Besenbacher, F., Bolund, L., Jensen, T. G., Kjems, J., Pu, W. T.
& Bünger, C. (2013).
A simple method for deriving functional MSCs and applied for osteogenesis in 3D scaffolds.
Scientific Reports,
3, Article 2243.
https://doi.org/10.1038/srep02243
Wang, F., Xu, Q., Zhuang, Z., Li, Z., Gao, Q., Huang, Y.
, Luo, Y., Zhang, X., Zhu, L. & Chao, C.-C. (2021).
A single-cell approach to engineer CD8+ T cells targeting cytomegalovirus.
Cellular & molecular immunology,
18, 1326-1328.
https://doi.org/10.1038/s41423-020-0466-z
Karlsson, M., Zhang, C., Méar, L., Zhong, W., Digre, A., Katona, B., Sjöstedt, E., Butler, L., Odeberg, J., Dusart, P., Edfors, F., Oksvold, P., von Feilitzen, K., Zwahlen, M., Arif, M., Altay, O., Li, X., Ozcan, M., Mardonoglu, A. ... Lindskog, C. (2021).
A single-cell type transcriptomics map of human tissues.
Science Advances,
7(31), Article eabh2169.
https://doi.org/10.1126/sciadv.abh2169
Olagnier, D., Farahani, E., Thyrsted, J., Blay-Cadanet, J., Herengt, A., Idorn, M., Hait, A., Hernaez, B.
, Knudsen, A., Iversen, M. B., Schilling, M.
, Jørgensen, S. E., Thomsen, M., Reinert, L. S., Lappe, M., Hoang, H.-D., Gilchrist, V. H.
, Hansen, A. L., Ottosen, R. ... Holm, C. K. (2020).
Author Correction: SARS-CoV2-mediated suppression of NRF2-signaling reveals potent antiviral and anti-inflammatory activity of 4-octyl-itaconate and dimethyl fumarate.
Nature Communications,
11(1), Article 5419.
https://doi.org/10.1038/s41467-020-19363-y
Wang, F., Ding, P., Liang, X.
, Ding, X., Brandt, C. B., Sjöstedt, E., Zhu, J., Bolund, S., Zhang, L., de Rooij, L. P. M. H., Luo, L., Wei, Y., Zhao, W., Lv, Z.
, Haskó, J., Li, R., Qin, Q., Jia, Y., Wu, W.
... Luo, Y. (2022).
Author Correction: Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level (Nature Communications, (2022), 13, 1, (3620), 10.1038/s41467-022-31388-z).
Nature Communications,
13(1), Article 6748.
https://doi.org/10.1038/s41467-022-34498-w
Liu, B., Chen, R., Zhang, Y., Huang, J.
, Luo, Y., Rosthøj, S., Zhao, C. & Jäättelä, M. (2023).
Cationic amphiphilic antihistamines inhibit STAT3 via Ca2+-dependent lysosomal H+ efflux.
Cell Reports,
42(2), Article 112137.
https://doi.org/10.1016/j.celrep.2023.112137
Feng, L., Chao, J., Tian, E., Li, L., Ye, P., Zhang, M., Chen, X., Cui, Q., Sun, G., Zhou, T., Felix, G., Qin, Y., Li, W., Meza, E. D., Klein, J., Ghoda, L., Hu, W.
, Luo, Y., Dang, W. ... Shi, Y. (2020).
Cell-Based Therapy for Canavan Disease Using Human iPSC-Derived NPCs and OPCs.
Advanced Science,
7(23), Article 2002155.
https://doi.org/10.1002/advs.202002155
Chen, M., Laursen, S. H., Habekost, M., Knudsen, C. H., Buchholdt, S. H., Huang, J., Xu, F., Liu, X.
, Bolund, L., Luo, Y., Nissen, P., Febbraro, F. & Denham, M. (2018).
Central and peripheral nervous system progenitors derived from human pluripotent stem cells reveal a unique temporal and cell-type specific expression of PMCAs.
Frontiers in Cell and Developmental Biology,
6, Article 5.
https://doi.org/10.3389/fcell.2018.00005
Jensen, K. T., Fløe, L., Petersen, T. S., Huang, J., Xu, F.
, Bolund, L., Luo, Y. & Lin, L. (2017).
Chromatin accessibility and guide sequence secondary structure affect CRISPR-Cas9 gene editing efficiency.
FEBS Letters,
591(13), 1892-1901.
https://doi.org/10.1002/1873-3468.12707
Lv, W., Pan, X., Han, P., Wang, Z., Feng, W., Xing, X., Wang, Q., Qu, K., Zeng, Y., Zhang, C., Xu, Z., Li, Y., Zheng, T., Lin, L., Liu, C., Liu, X., Li, H., Henriksen, R. A.
, Bolund, L. ... Luo, Y. (2022).
Circle-Seq reveals genomic and disease-specific hallmarks in urinary cell-free extrachromosomal circular DNAs.
Clinical and Translational Medicine,
12(4), Article e817.
https://doi.org/10.1002/ctm2.817
Wang, J.
, Luo, Y., Wang, K., Wang, Y., Zhang, X., Teng, H. & Sun, Z. (2014).
Clock-controlled StAR's expression and corticosterone production contribute to the endotoxemia immune response.
Chronobiology International, 1-10.
https://doi.org/10.3109/07420528.2014.982284
Banerjee, S., Zhang, X., Kuang, S., Wang, J., Li, L., Fan, G.
, Luo, Y., Sun, S., Han, P., Wu, Q., Yang, S., Ji, X., Li, Y., Deng, L., Tian, X., Wang, Z., Zhang, Y., Wu, K., Zhu, S. ... Liu, X. (2021).
Comparative analysis of clonal evolution among patients with right- and left-sided colon and rectal cancer.
iScience,
24(7), Article 102718.
https://doi.org/10.1016/j.isci.2021.102718
Jager, S. E.
, Pallesen, L. T., Lin, L., Izzi, F.
, Pinheiro, A. M., Villa-Hernandez, S., Cesare, P.
, Vaegter, C. B. & Denk, F. (2022).
Comparative transcriptional analysis of satellite glial cell injury response.
Wellcome Open Research,
7, Article 156.
https://doi.org/10.12688/wellcomeopenres.17885.1
Fei, G., Luo, Y., Li, S., Li, J., Lin, L., Nielsen, A. L., Sørensen, C. B., Vajta, G., Wang, J., Zhang, X., Du, Y., Yang, H.
& Bolund, L. (2011).
Comparison of gene expression and genome-wide DNA methylation profiling between phenotypically normal cloned pigs and conventionally bred controls.
P L o S One,
6(10), e25901.
https://doi.org/10.1371/journal.pone.0025901
Zhao, X., Qu, K., Curci, B., Yang, H.
, Bolund, L., Lin, L. & Luo, Y. (2023).
Comparison of In-Frame Deletion, Homology-Directed Repair, and Prime Editing-Based Correction of Duchenne Muscular Dystrophy Mutations.
Biomolecules,
13(5), Article 870.
https://doi.org/10.3390/biom13050870
Lin, L., Kragh, P. M., Purup, S., Du, Y., Zhang, X., Bolund, L.
, Callesen, H. & Vajta, G. (2009).
Comparison of the effects of pre-treatment with sodium chloride, sucrose and trehalose on developmental competence porcine oocytes.
Reproduction, Fertility and Development, (1), 121.
https://doi.org/10.1071/RDv21n1Ab43
Møller, H. D., Lin, L., Xiang, X., Petersen, T. S., Huang, J., Yang, L.
, Kjeldsen, E., Jensen, U. B., Zhang, X., Liu, X., Xu, X., Wang, J., Yang, H., Church, G. M.
, Bolund, L., Regenberg, B.
& Luo, Y. (2018).
CRISPR-C: circularization of genes and chromosome by CRISPR in human cells.
Nucleic Acids Research,
46(22), e131. Article e131.
https://doi.org/10.1093/nar/gky767
Corsi, G. I., Qu, K., Alkan, F., Pan, X.
, Luo, Y. & Gorodkin, J. (2022).
CRISPR/Cas9 gRNA activity depends on free energy changes and on the target PAM context.
Nature Communications,
13(1), Article 3006.
https://doi.org/10.1038/s41467-022-30515-0
Xiang, X., Li, C., Chen, X., Dou, H., Li, Y., Zhang, X.
& Luo, Y. (2019).
CRISPR/Cas9-Mediated Gene Tagging: A Step-by-Step Protocol. In Y. Luo (Ed.),
Methods in Molecular Biology (pp. 255-269). Humana Press.
https://doi.org/10.1007/978-1-4939-9170-9_16
Porter, R., Černoša, A., Fernández-Sanmartín, P., Cortizas, A. M., Aranda, E.
, Luo, Y., Zalar, P., Podlogar, M., Gunde-Cimerman, N. & Gostinčar, C. (2023).
Degradation of polypropylene by fungi Coniochaeta hoffmannii and Pleurostoma richardsiae.
Microbiological Research,
277, Article 127507.
https://doi.org/10.1016/j.micres.2023.127507
Huang, J., Lin, Q., Fei, H., He, Z., Xu, H., Li, Y.
, Qu, K., Han, P., Gao, Q., Li, B., Liu, G., Zhang, L., Hu, J., Zuo, E.
, Luo, Y., Ran, Y., Qiu, J.-L., Zhao, K. T. & Gao, C. (2023).
Discovery of deaminase functions by structure-based protein clustering.
Cell,
186(15), 3182-3195.e14.
https://doi.org/10.1016/j.cell.2023.05.041
Gao, F., Li, S., Lin, L., Li, J., Luo, Y., Zhang, X.
, Nielsen, A. L. & Bolund, L. (2011).
DNA Methylation in Peripheral Blood Cells of Pigs Cloned by Somatic Cell Nuclear Transfer.
Cellular Reprogramming,
13(4), 307-314.
https://doi.org/10.1089/cell.2010.0099
Korsholm, L. M., Gál, Z.
, Lin, L., Quevedo, O., Ahmad, D. A., Dulina, E.
, Luo, Y., Bartek, J. & Larsen, D. H. (2019).
Double-strand breaks in ribosomal RNA genes activate a distinct signaling and chromatin response to facilitate nucleolar restructuring and repair.
Nucleic Acids Research,
47(15), 8019-8035.
https://doi.org/10.1093/nar/gkz518
Neldeborg, S., Soerensen, J. F., Møller, C. T., Bill, M., Gao, Z., Bak, R. O., Holm, K., Sorensen, B., Nyegaard, M., Luo, Y., Hokland, P., Stougaard, M., Ludvigsen, M. & Holm, C. K. (2023).
Dual intron-targeted CRISPR-Cas9-mediated disruption of the AML RUNX1-RUNX1T1 fusion gene effectively inhibits proliferation and decreases tumor volume in vitro and in vivo.
Leukemia,
37(9), 1792-1801.
https://doi.org/10.1038/s41375-023-01950-9
Liu, Y., Østrup, O.
, Li, J., Vajta, G., Lin, L., Kragh, P. M.
, Purup, S. & Callesen, H. (2010).
Effect of Xenopus egg extract treatment of donor cells on porcine somatic cell nuclear transfer.
Reproduction, Fertility and Development, (1), 192.
Liu, Y., Østrup, O.
, Li, J., Vajta, G.
, Lin, L., Kragh, P. M., Purup, S. & Callesen, H. (2010).
Effect of Xenopus egg extract treatment of donor cells on porcine somatic cell nuclear transfer. Poster session presented at Annual Conference of the International Embryo Transfer Society, Cordoba, Argentina.
Lin, L., Luo, Y., Sørensen, P., Prætorius, H., Vajta, G., Callesen, H., Pribenszky, C.
, Bolund, L. & Kristensen, T. N. (2014).
Effects of high hydrostatic pressure on genomic expression profiling of porcine parthenogenetic activated and cloned embryos.
Reproduction, Fertility and Development,
26, 469-484.
https://doi.org/10.1071/RD13037